Complete quantification solution

Easy and quick handling of large sets of images

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Biopix is the complete quantification solution!

BioPix is a free, easy-to-use software for image analysis for biomedical research teams and pharmaceutical companies. Biopix makes it easy to automatically quantify large quantities of images and biological preparations.

Biopix is suitable for both publication in scientific journals and effective studies in pharmaceutical companies, as well for use in pathology where large quantities of samples are analysed every day.

Designed by users.

Why biopix


Analysis with BioPix iQ is faster than with any other software.

Designed by users

From the very start of Biopix users have defined how our software works. We are comitted to stay true to this approach.

Scanner integration

The BioPix software can be integrated with virtually any on the market existing scanner, hence enabling major timesaving. Contact us for quote regarding scanner integration.

Use in large scale

Adjust your settings on one image, and then quantify hundreds.

For cells

The program is specialized in detecting objects and areas defined by color or intensity

Multiple images

Possibility to work with several images at the same time. In combination with the user-friendly environment

Easy-to-use interface

Powerful automatic and manual marking tools, gives you perfect control of the quantifications.

One version for multiple application areas

BioPix is a generic tool and can be used in a several different domains

BioPix Immunology

A novel tool for detailed, quantitative cell analysis optimized for histological and cellular staining of immune cells. Example measurements include cell counting of labeled cell types normalized to total cell pools, but also in-depth analysis of many other aspects of immunological bioscience.
Easily select the stained areas of your samples using the interactive tools.

BioPix Cell Biology

The BioPix tool optimized for quantifications and measurements of intracellular objects. BioPix is also suitable for direct quantifications of stained cell types and various morphometrics. The combination of user-friendly tools gives freedom to address your specific research question.

Reference customers

You are in good hands, the Biopix community includes the following companies, laboratories, and organizations.


The BioPix software has been extensively and scientifically verified for a variety of applications. Quantifications of different stains in 2D and 3D have been successfully correlated with biochemical analysis.
  • Low Carotid Calcium Score Is Associated With Higher Levels of Glycosaminoglycans, Tumor Necrosis Factor-Alpha

    Edsfeldt et al, Stroke
  • Inhibition of Nuclear Factor of Activated T-Cells (NFAT) Suppresses Accelerated Atherosclerosis in Diabetic Mice

    Zetterqvist et al, PlosONE
  • Plasma levels of high-sensitive C-reactive protein do not correlate with inflammatory activity in carotid atherosclerotic plaques

    Grufman et. al. Journal of Internal Medicine
  • DC-derived IL-18 drives Treg differentiation, murine Helicobacter pylori–specific immune tolerance, and asthma protection

    Oertli et al, JCI
  • Fibromodulin Deficiency Reduces Low-Density Lipoprotein Accumulation in Atherosclerotic Plaques in Apolipoprotein E–Null Mice

    Shami et al, ATVB
  • Targeting filamin A reduces K-RAS–induced lung adenocarcinomas and endothelial response to tumor growth in mice

    Nallapalli et al, Molecular Cancer
  • A mouse model reveals an important role for catecholamine-induced lipotoxicity in the pathogenesis of stress-induced cardiomyopathy

    Shao, European Journal of Heart Failure
  • Stromal Vascular Fraction Transplantation as an Alternative Therapy for Ischemic Heart Failure: Anti-inflammatory Role

    Premaratne et al, J Cardiothoracic surgery


We know by experience that the best way to learn Biopix and all it's features is to watch someone else using the software. You find a number of tutorial videos of how to use and work with Biopix IQ below. Please contact us if you have specific requests.